receptor-utils

Contents:

  • Introduction
  • Using AIRR Community Reference Sets with IgBLAST
  • Using AIRR Community Reference Sets with MiXCR
  • Example Usage
  • Using AIRR Community Reference Sets with 10X Cell Ranger
  • Example Usage
  • Using custom databases with IgBlast
  • Command-Line Utilities
    • Naming and Aligning V, D and J Sequences
      • name_allele
      • gap_sequences
      • create_alignment
      • fix_macaque_gaps
    • Working with IgBLAST
      • download_germline_set
      • make_igblast_ndm
      • annotate_j
      • make_mixcr_json
    • Convenience Tools
      • download_germline_set
      • make_leader_fasta
      • extract_refs
      • fix_macaque_gaps
      • identical_seqs
      • rev_comp
      • at_coords
      • merge_fasta
  • receptor_utils
receptor-utils
  • Command-Line Utilities
  • View page source

Command-Line Utilities

Naming and Aligning V, D and J Sequences

  • name_allele
  • gap_sequences
  • create_alignment
  • fix_macaque_gaps

Working with IgBLAST

  • download_germline_set
  • make_igblast_ndm
  • annotate_j
  • make_mixcr_json

Convenience Tools

  • download_germline_set
  • make_leader_fasta
  • extract_refs
  • fix_macaque_gaps
  • identical_seqs
  • rev_comp
  • at_coords
  • merge_fasta
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© Copyright 2022, William Lees.

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