annotate_j

Annotate a set of J sequences, finding the frame alignment and 1-based index of the first nucleotide of the conserved PHE or TRP

usage: annotate_j [-h] [--verbose] seq_file out_file

Positional Arguments

seq_file

J sequences to annotate (fasta or AIRR-C JSON format)

out_file

Annotation output in aux format for use with IgBlast

Named Arguments

--verbose, -v

Verbose output

Default: False