make_leader_fasta

Create a fasta file containing leader sequences for all V alleles in a given JSON file.

usage: make_leader_fasta [-h] [--aa] json_file out_file

Positional Arguments

json_file: Path to the input JSON file containing germline set information.
out_file: Path to the output FASTA file to be created.

--aa

Translate leader sequences to amino acids.

Default: False

This command will create a FASTA file containing only the leader sequences from a germline reference set in AIRR-C MIAIRR format.