make_mixcr_json

Make a mixcr-compatible json file from MIARR json file.

usage: make_mixcr_json [-h] [--taxon_id TAXON_ID] [--species_name SPECIES_NAME] miairr_ref_file mixcr_ref_file

Positional Arguments

miairr_ref_file

MIAIRR reference set (.json)

mixcr_ref_file

output file (.json)

Named Arguments

--taxon_id, -t

taxon ID for the reference set (e.g. 9606 for human)

--species_name, -s

species name for the reference set (e.g. “Homo sapiens”)

Notes

This command will create a germline reference set in Mixcr’s JSON format using as input a reference set in AIRR-C MIAIRR format. If species name and/or taxon id are not provided, the utility will attempt to determine them from the input file.