blastresults_to_csv

blastresults_to_csv converts the output of a blast search in ‘format 7’ into csv format. If there were multiple query sequences, results are split into separate files. Please refer to Annotating the rhesus macaque IGH locus for example usage of this and the other ‘individual’ commands.

Convert blast file format 7 to one or more CSVs

usage: blastresults_to_csv [-h] [-a] infile out_prefix

Positional Arguments

infile

the blast file

out_prefix

prefix for csv files

Named Arguments

-a, --append

append to existing output files

Default: False